Protege, the ontology editor and knowledge acquisition system, has a plug-in which is used to visualize ontologies. Since some time now, the plug-in is installed with the Protege system. There is a problem though. The plug-in, OWL Viz is dependent on the graph visualization software Graphviz, which needs to be installed separately (can be downloaded here). If it is not installed to it's standard location, then Protege need to be pointed to it. That is done on Windows as following:
1. File->Preferences
2. Click on the Tab OWL Viz
3. Under General Options set the Dot Application Path to dot.exe (in Graphviz's bin folder).